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Voltage-to-Wiring Sim
Notebooks
2024-07-01 · AdExNet-Brian
2024-05-29 · Residuals linefit
2024-05-26 · Fix template-based method
2024-04-12 · Spikes-only connection inference
2024-04-10 · Overview figure
2024-01-11 · Re-make network hops barplots
2023-09-20 · STA conntest for diff recording quality n durations
2023-09-13 · Clippin and Ceilin
2023-09-05 · Inhibitory impulse response (PSP)
2023-09-05 · Ceil spikes
2023-08-31__STA_conntest
2023-08-30__STA_examples
2023-08-22__speedtest_end-to-end_nb_worfklow_julia_only__diy_pyplotlib
2023-08-22__minimal_diy_ijulia_matplotlib
2023-08-20__speedtest_end-to-end_nb_worfklow_julia_only__pythoncall_pythonplot
2023-08-16__STA_conntest_pyjulia
2023-08-10__speedtest_end-to-end_nb_worfklow_pyjulia
2023-08-10__speedtest_end-to-end_nb_worfklow_julia_only
2023-08-09__Poisson_cquantile_upperbound
2023-08-05__AdEx_Nto1_we_sweep
2023-08-02__speedtest_brian_standalone_AdEx_Nto1
2023-08-02__Julia_speedtest_AdEx_Nto1
2023-07-26__AdEx_Nto1_we_I_syn
2023-07-10__AdEx_Nto1_Brian_speedtest
2023-06-23__Vm_traces_AdEx_Izh__Brian
2023-05-27__synaptic_cond_example
2023-04-11 • Nto1 AdEx sims: conntest method comparison
2023-02-07 • AdEx Nto1
2023-02-07 • [input] to ‘AdEx Nto1’
2023-02-07 • AdEx ↔ Izhikevich comparison
2023-01-19 • Fit a line
2023-01-19 • [input] to ‘Fit a line’
2022-10-24 • N-to-1 with lognormal inputs
2022-10-23 • Spike-triggered voltage statistics
2022-10-17 • General simulator software design
2022-10-13 • Find non-lognormal firing rates bug
2022-10-11 • N-to-1 output rate (edit of ‘2022-05-02’)
2022-10-04 • Use faster curve fit for connection inference
2022-10-04 • Inspect curve-fitting procedure
2022-09-30 • Use parametric STA model for connection testing
2022-09-29 • Summary of two-pass conntest
2022-09-15 • Two-pass connection test: ptp, then corr with found avg
2022-09-13 • Fit simpler model to STA – part 2
2022-09-13 • Fit simpler model to STA
2022-09-11 • Fit function to STA
2022-09-09 • Connection test using template matching
2022-09-05 • Why are some connections not detected
2022-09-01 • 1144 weights
2022-08-29 • Visualizing subnets
2022-08-28 • Centred STAs
2022-08-21 • Area under STA (new conntest)
2022-08-17 • Investigate correlated spikers
2022-08-05 • Spiketrain correlations (of unconnected-but-detected)
2022-07-26 • Multiseed
2022-07-23 • Record many neurons
2022-07-15 • Network + VI Noise
2022-07-14 • Not directly connected but detected
2022-07-05 • Network conntest Roxin params
2022-07-01 • g_EI
2022-05-13 • Network
2022-05-02• STA mean vs peak-to-peak
2022-04-28 • Interpolate N = 30 .. 6000
2022-03-28 • The invariant measure: total stimulation
2022-03-02 • Duration & SNR for big-N–to–1
2022-02-21 • FENS 2022 Abstract
2022-02-21 • Image, window, test
2022-02-20 • Fixed timestep Euler solver in vanilla Julia
2022-02-07 • N-to-1 simulation
2022-01-08 • Lognormal input firing rates
2021-12-08 • Biology vs Izhikevich subthreshold
2021-12-06 • Local shape of
\(\dot{V}\)
in 2D HH
2021-12-02 • LIF vs Izhikevich subthreshold
2021-11-11 • Vary both inhibitory strength and proportion
2021-11-05 • Vary I/E synaptic conductances
2021-09-27 • Vary E/I proportion
2021-07-30 • Inhibitory connections
2021-01-13 • Multiple ROC’s
2021-01-06 • ROC
2021-01-01 • Influence of simulation params on connection test
2020-12-30 • Test connection of
all
incoming neurons
2020-12-11 • KS test exponential distribution
2020-11-27 • Permutation test for
\(p(\)
connected
\()\)
2020-10-23 • Delete signal around spikes before STA
2020-09-18 • Clip spikes before STA
2020-09-10 • STA for ≠ PSP shapes
2020-07-29 • Spike-triggered averaging
2020-07-27 • Synaptic conductances
2020-07-06 • Single neuron simulation
Unpolished Notebooks
Intro
2022-07-14 • Not directly connected but detected – with self-bug
2022-02-21 • Build jb toc automatically
2022-02-18 • Scale up N and duration
2022-01-04 • Hello Julia
2021-11-18 • Prototype new sim
2021-11-18 • Constant input spikes
2021-12-08 • Cortical params for Hodgkin-Huxley
2021-11-04 • Control for output spike rate
2021-03-10 • Conditional pdf
2021-01-13 • Connection test plot functions
2020-01-02 • Trying out a full network simulation
2021-01-01 • Debug parallel
_calc_STA
2020-11-30 • Sparse spike trains
2020-11-30 • Speedup spikes & STA calc
2020-11-27 • Factoring out windowing & averaging code
2020-11-16 Searching for an analytical form for the PSP
2020-07-28 • Storing values in base units
2020-07-05 • Izhikevich paper testing
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